类型错误：在 pandas DataFrame上使用Dask时无法设置PICKLE_THREAD._LOCAL对象对象、错误、类型、_LOCAL
2023-09-03 08:04:20
作者：十字当头的我们说什么永远
我有一个巨大的DataFrame，为了节省时间，我想使用Dask来处理它。问题是，当这个TypeError: can't pickle _thread._local objects错误一开始运行时，我就陷入了这个错误。有人能帮帮我吗？
我已经编写了一个函数，该函数根据df的行来处理存储在df中的数据，并用
out = df_query.progress_apply(lambda row: run(row), axis=1)
并且运行正常。
由于这需要很长时间，我开始使用DASK：
ddata = dd.from_pandas(df_query, npartitions=3)
out = ddata.map_partitions(lambda df: df.apply((lambda row: run(row)), axis=1)).compute(scheduler='processes')
问题是，一旦处理开始，我就会收到这个错误(在巨大的回溯之后，见下文)：TypeError: can't pickle _thread._local objects
run(...)函数执行一些数据操作，包括查询数据库。
以下是完整的回溯：
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-14-aefae1f00437> in <module>
----> 1 out = ddata.map_partitions(lambda df: df.apply((lambda row: run(row)), axis=1)).compute(scheduler='processes')
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/base.py in compute(self, **kwargs)
154 dask.base.compute
155 """
--> 156 (result,) = compute(self, traverse=False, **kwargs)
157 return result
158
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/base.py in compute(*args, **kwargs)
396 keys = [x.__dask_keys__() for x in collections]
397 postcomputes = [x.__dask_postcompute__() for x in collections]
--> 398 results = schedule(dsk, keys, **kwargs)
399 return repack([f(r, *a) for r, (f, a) in zip(results, postcomputes)])
400
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/multiprocessing.py in get(dsk, keys, num_workers, func_loads, func_dumps, optimize_graph, pool, **kwargs)
190 get_id=_process_get_id, dumps=dumps, loads=loads,
191 pack_exception=pack_exception,
--> 192 raise_exception=reraise, **kwargs)
193 finally:
194 if cleanup:
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/local.py in get_async(apply_async, num_workers, dsk, result, cache, get_id, rerun_exceptions_locally, pack_exception, raise_exception, callbacks, dumps, loads, **kwargs)
447 # Seed initial tasks into the thread pool
448 while state['ready'] and len(state['running']) < num_workers:
--> 449 fire_task()
450
451 # Main loop, wait on tasks to finish, insert new ones
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/local.py in fire_task()
441 # Submit
442 apply_async(execute_task,
--> 443 args=(key, dumps((dsk[key], data)),
444 dumps, loads, get_id, pack_exception),
445 callback=queue.put)
~/anaconda3/envs/testenv/lib/python3.7/site-packages/dask/multiprocessing.py in _dumps(x)
24
25 def _dumps(x):
---> 26 return cloudpickle.dumps(x, protocol=pickle.HIGHEST_PROTOCOL)
27
28
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in dumps(obj, protocol)
950 try:
951 cp = CloudPickler(file, protocol=protocol)
--> 952 cp.dump(obj)
953 return file.getvalue()
954 finally:
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in dump(self, obj)
265 self.inject_addons()
266 try:
--> 267 return Pickler.dump(self, obj)
268 except RuntimeError as e:
269 if 'recursion' in e.args[0]:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in dump(self, obj)
435 if self.proto >= 4:
436 self.framer.start_framing()
--> 437 self.save(obj)
438 self.write(STOP)
439 self.framer.end_framing()
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_tuple(self, obj)
769 if n <= 3 and self.proto >= 2:
770 for element in obj:
--> 771 save(element)
772 # Subtle. Same as in the big comment below.
773 if id(obj) in memo:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_tuple(self, obj)
769 if n <= 3 and self.proto >= 2:
770 for element in obj:
--> 771 save(element)
772 # Subtle. Same as in the big comment below.
773 if id(obj) in memo:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
547
548 # Save the reduce() output and finally memoize the object
--> 549 self.save_reduce(obj=obj, *rv)
550
551 def persistent_id(self, obj):
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
636 else:
637 save(func)
--> 638 save(args)
639 write(REDUCE)
640
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_tuple(self, obj)
784 write(MARK)
785 for element in obj:
--> 786 save(element)
787
788 if id(obj) in memo:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
885 k, v = tmp[0]
886 save(k)
--> 887 save(v)
888 write(SETITEM)
889 # else tmp is empty, and we're done
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_tuple(self, obj)
784 write(MARK)
785 for element in obj:
--> 786 save(element)
787
788 if id(obj) in memo:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_tuple(self, obj)
769 if n <= 3 and self.proto >= 2:
770 for element in obj:
--> 771 save(element)
772 # Subtle. Same as in the big comment below.
773 if id(obj) in memo:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_list(self, obj)
814
815 self.memoize(obj)
--> 816 self._batch_appends(obj)
817
818 dispatch[list] = save_list
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_appends(self, items)
838 write(MARK)
839 for x in tmp:
--> 840 save(x)
841 write(APPENDS)
842 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_list(self, obj)
814
815 self.memoize(obj)
--> 816 self._batch_appends(obj)
817
818 dispatch[list] = save_list
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_appends(self, items)
838 write(MARK)
839 for x in tmp:
--> 840 save(x)
841 write(APPENDS)
842 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function(self, obj, name)
393 or getattr(obj.__code__, 'co_filename', None) == '<stdin>'
394 or themodule is None):
--> 395 self.save_function_tuple(obj)
396 return
397 else:
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function_tuple(self, func)
592 if hasattr(func, '__qualname__'):
593 state['qualname'] = func.__qualname__
--> 594 save(state)
595 write(pickle.TUPLE)
596 write(pickle.REDUCE) # applies _fill_function on the tuple
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
885 k, v = tmp[0]
886 save(k)
--> 887 save(v)
888 write(SETITEM)
889 # else tmp is empty, and we're done
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function(self, obj, name)
393 or getattr(obj.__code__, 'co_filename', None) == '<stdin>'
394 or themodule is None):
--> 395 self.save_function_tuple(obj)
396 return
397 else:
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function_tuple(self, func)
592 if hasattr(func, '__qualname__'):
593 state['qualname'] = func.__qualname__
--> 594 save(state)
595 write(pickle.TUPLE)
596 write(pickle.REDUCE) # applies _fill_function on the tuple
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function(self, obj, name)
393 or getattr(obj.__code__, 'co_filename', None) == '<stdin>'
394 or themodule is None):
--> 395 self.save_function_tuple(obj)
396 return
397 else:
~/anaconda3/envs/testenv/lib/python3.7/site-packages/cloudpickle/cloudpickle.py in save_function_tuple(self, func)
592 if hasattr(func, '__qualname__'):
593 state['qualname'] = func.__qualname__
--> 594 save(state)
595 write(pickle.TUPLE)
596 write(pickle.REDUCE) # applies _fill_function on the tuple
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
547
548 # Save the reduce() output and finally memoize the object
--> 549 self.save_reduce(obj=obj, *rv)
550
551 def persistent_id(self, obj):
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
660
661 if state is not None:
--> 662 save(state)
663 write(BUILD)
664
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
547
548 # Save the reduce() output and finally memoize the object
--> 549 self.save_reduce(obj=obj, *rv)
550
551 def persistent_id(self, obj):
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_reduce(self, func, args, state, listitems, dictitems, obj)
660
661 if state is not None:
--> 662 save(state)
663 write(BUILD)
664
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
502 f = self.dispatch.get(t)
503 if f is not None:
--> 504 f(self, obj) # Call unbound method with explicit self
505 return
506
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save_dict(self, obj)
854
855 self.memoize(obj)
--> 856 self._batch_setitems(obj.items())
857
858 dispatch[dict] = save_dict
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in _batch_setitems(self, items)
880 for k, v in tmp:
881 save(k)
--> 882 save(v)
883 write(SETITEMS)
884 elif n:
~/anaconda3/envs/testenv/lib/python3.7/pickle.py in save(self, obj, save_persistent_id)
522 reduce = getattr(obj, "__reduce_ex__", None)
523 if reduce is not None:
--> 524 rv = reduce(self.proto)
525 else:
526 reduce = getattr(obj, "__reduce__", None)
TypeError: can't pickle _thread._local objects
推荐答案
您的run函数可能引用了其作用域之外的变量，这些变量将被捕获到闭包中。确保已在函数内创建了任何文件句柄或数据库连接
错误：
conn = DBConn(...)
def run(row):
return conn.do_stuff(row)
好：
def run(row):
conn = DBConn(...)
return conn.do_stuff(row)
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